Package: cp4p 0.3.6
cp4p: Calibration Plot for Proteomics
Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
Authors:
cp4p_0.3.6.tar.gz
cp4p_0.3.6.zip(r-4.7)cp4p_0.3.6.zip(r-4.6)cp4p_0.3.6.zip(r-4.5)
cp4p_0.3.6.tgz(r-4.6-any)cp4p_0.3.6.tgz(r-4.5-any)
cp4p_0.3.6.tar.gz(r-4.7-any)cp4p_0.3.6.tar.gz(r-4.6-any)
cp4p_0.3.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cp4p/json (API)
| # Install 'cp4p' in R: |
| install.packages('cp4p', repos = c('https://jacky11.r-universe.dev', 'https://cloud.r-project.org')) |
- LFQRatio2 - Dataset "LFQRatio2"
- LFQRatio25 - Dataset "LFQRatio25"
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:870b13818b. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 168 | ||
| source / vignettes | OK | 273 | ||
| linux-release-x86_64 | OK | 189 | ||
| macos-release-arm64 | OK | 165 | ||
| macos-oldrel-arm64 | OK | 221 | ||
| windows-devel | OK | 136 | ||
| windows-release | OK | 130 | ||
| windows-oldrel | OK | 133 | ||
| wasm-release | OK | 133 |
Exports:adjust.pcalibration.plotestim.pi0
Dependencies:backportsbase64encBiobaseBiocGenericsbitbit64broombslibcachemclicliprcodetoolscpp11crayondigestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachfsgdtoolsgeeMgeepackgenericsggformulaggiraphggplot2ggridgesglmnetgluegtablehavenhighrhmshtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonlitekinship2knitrlabelinglabelledlatticelifecyclelimmamagrittrMASSMatrixmemoiseMESSmimemosaicCoremulttestmvtnormpillarpkgconfigplyrprettyunitsprogresspurrrquadprogqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelreadrreshape2rlangrmarkdownS7sassscalesshapestatmodstringistringrsurvivalsystemfontstibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Introduction to the CP4P package | cp4p-package cp4p |
| Adjusted p-values for adaptive FDR control | adjust.p |
| Displaying the "Calibration Plot" of a vector of p-values. | calibration.plot |
| Estimation of the proportion of true null hypotheses | estim.pi0 |
| Dataset "LFQRatio2" | LFQRatio2 |
| Dataset "LFQRatio25" | LFQRatio25 |
